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Whole genome doubling-induced the enrichment of H3K27me3 in genes carrying specific TEs in Aegilops tauschii

文献类型： 外文期刊

作者： Guo, Hongwei 1 ; Zhang, Guoyan 1 ; Zhou, Min 1 ; Wan, Min 1 ; Zhu, Bo 1 ; Yang, Zujun 4 ; Zeng, Deying 1 ; Zeng, Zixian 1 ;

作者机构： 1.Sichuan Normal Univ, Coll Life Sci, Dept Biol Sci, Chengdu, Sichuan, Peoples R China

2.Sichuan Acad Agr Sci, Hort Inst, Chengdu, Peoples R China

3.Sichuan Normal Univ, Plant Funct Genom & Bioinformat Res Ctr, Chengdu, Sichuan, Peoples R China

4.Univ Elect Sci & Technol China, Ctr Informat Biol, Sch Life Sci & Technol, Chengdu, Peoples R China

关键词： whole-genome doubling; Aegilops tauschii; transcriptome; transposable elements

期刊名称：FRONTIERS IN GENETICS （ 影响因子：3.7； 五年影响因子：4.3 ）

ISSN：

年卷期： 2023 年 14 卷

页码：

收录情况： SCI

摘要： Polyploidization plays important roles in the evolution and breeding of the common wheat. Aegilops tauschii, the D-genome progenitor of the common wheat, provides a valuable pool of resistance genes to multiple diseases. Extensive studies focus on the exploration of these genes for wheat improvement. However, few studies have unveiled alternations on genome-wide expression pattern and histone modifications induced by whole-genome doubling (WGD) process. In this study, we conducted transcriptome analysis for the diploid and tetraploid Ae. taushcii lines using the leaf and root tissues. Both lines tend to display similar tissue-specific pattern. Interestingly, we found that TEs located in genic regions were depleted of the repressive histone mark H3K27me3, whereas their adjacent chromatin was enriched with H3K27me3. The tetraploid line exhibited higher levels of H3K27me3 in those regions than the diploid line, particularly for genic regions associated with TEs of the long interspersed nuclear elements (LINEs), CACTA, PIF/Harbinger, Tc1/Mariner and unclassed DNA transposon. Surprisingly, the expression levels of these TEs cognate genes were negatively associated with the levels of H3K27me3 between the tetraploid and diploid lines, suggesting the five types of TEs located within genic regions might be involved in the regulation of the ploidy-related gene expression, possibly through differential enrichment of H3K27me3 in the genic regions. These findings will help to understand the potential role of specific types of TEs on transcription in response to WGD.

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