Genome-wide identification and evolutionary analysis of WOX gene family in cucurbit crops
文献类型： 外文期刊
作者： Li, Chun 1 ; He, Zhen 1 ; Liang, Genyun 1 ; Yang, Nan 1 ; Cai, Peng 1 ; Liang, Ying 1 ; Li, Yuejian 1 ; Fang, Chao 1 ; Liu, Duchen 1 ; Xia, Feng 1 ; Liu, Xiaojun 1 ;
作者机构： 1.Sichuan Acad Agr Sci, Horticulutre Res Inst, Chengdu 610066, Peoples R China
2.Sichuan Agr Univ, Rice Res Inst, Chengdu 611130, Peoples R China
3.Vegetable Germplasm Innovat & Variety Improvement, Chengdu 610066, Peoples R China
4.Sichuan Prov Engn Technol Res Ctr Vegetables, Chengdu 611934, Peoples R China
关键词： WOX genes; Cucurbitaceae; Evolution
期刊名称：HORTICULTURE ENVIRONMENT AND BIOTECHNOLOGY （ 影响因子：2.4； 五年影响因子：2.5 ）
ISSN： 2211-3452
年卷期： 2023 年
页码：
收录情况： SCI
摘要： The WUSCHEL-related homeobox (WOX) gene family is essential for plant growth and development. However, the identification and evolutionary analysis of WOX genes in the Cucurbitaceae have not been well investigated. In the present work, we performed a genome-wide analysis to identify WOX genes in eleven cucurbit crops. In total, 127 WOX genes were identified in eleven cucurbit crops, and classified into three different clades: the ancient clade, the intermediate clade and the WUS clade. The same clade has comparable gene organization and conserved motif patterns. The cis-acting element analysis revealed that WOX genes were involved in light, hormone and stress in cucurbit crops. Gene duplication analysis indicated that dispersed duplication and whole genome duplication were the two primary causes of WOX genes expansion. There were 24 and 129 gene pairs found within cucurbit crops, and between Cucumis sativus and other cucurbit crops, respectively. After gene duplication, all WOX genes were subjected to substantial purifying selection pressure according to the selective pressure analysis. Functional divergence analysis revealed that ancient and intermediate clades may have descended from some essential amino acid sites rather than different evolution rate. Our research provides a comprehensive analysis of WOX genes which will be helpful for further research into their function study in Cucurbitaceae plants.
- 相关文献
作者其他论文 更多>>
-
Genome-Wide Analysis of Mlo Genes and Functional Characterization of Cm-mlo38 and Cm-mlo44 in Regulating Powdery Mildew Resistance in Melon
作者：Gong, Fangyi;Lan, Yanhong;Zhang, Tian;Li, Chun;Li, Yifan;Xia, Feng;Liu, Xiaojun;Liu, Duchen;Liang, Genyun;Cai, Peng;Fang, Chao;Gong, Fangyi;Lan, Yanhong;Zhang, Tian;Li, Chun;Li, Yifan;Xia, Feng;Liu, Xiaojun;Liu, Duchen;Liang, Genyun;Cai, Peng;Fang, Chao
关键词：
Cucurbitaceae ; powdery mildew resistance; Mlo -
Genome-wide characterization of the cytochrome P450 gene family in Solanum melongena and functional analysis of SmCYP82C1 under cold stress
作者：Lan, Yanhong;Gong, Fangyi;Liu, Xiaojun;Liu, Duchen;Liang, Genyun;Li, Chun;Xia, Feng;Li, Yifan;Fang, Chao;Cai, Peng;Lan, Yanhong;Gong, Fangyi;Liu, Xiaojun;Liu, Duchen;Liang, Genyun;Li, Chun;Xia, Feng;Li, Yifan;Fang, Chao;Cai, Peng;Lan, Yanhong;Gong, Fangyi;Liu, Xiaojun;Liu, Duchen;Liang, Genyun;Li, Chun;Xia, Feng;Li, Yifan;Fang, Chao;Cai, Peng
关键词：Genome-wide analysis;
CYP450 gene family;Solanum melongena ; Cold stress -
Variation in Nutritional Qualities and Antioxidant Capacity of Different Leaf Mustard Cultivars
作者：Cheng, Wenjuan;Luo, Anqi;Li, Hongxia;Zhang, Fen;Huang, Zhi;Tang, Yi;Li, Huanxiu;Sun, Bo;Liang, Kehao;Yu, Xuena;Cheng, Wenjuan;Chen, Zhifeng;Guan, Zhongrong;Escalona, Victor Hugo;Liu, Duchen;Zhou, Yu'nong
关键词：
Brassica juncea ; nutritional quality; variant; antioxidants; membership function -
Chromosome-level genome assembly of the Adonis ladybird Hippodamia variegata
作者：Liu, Hong-Ling;Yong, Yan-Ping;Wu, Xing-Long;Pu, De-Qiang;Chen, Zhi-Teng;Wei, Shu-Jun;Cai, Peng
关键词：
-
Transcriptomics and Metabolomics Reveal the Dwarfing Mechanism of Pepper Plants Under Ultraviolet Radiation
作者：Zhang, Zejin;Liang, Ying;Tang, Li;Yan, Zhengnan;Ding, Xiangyu;Shen, Haoxu;Liu, Qi;Song, Jinxiu;Lu, Na
关键词：plant height; ultraviolet radiation; metabolic pathway; pepper; gibberellin
-
Integrated metabolome and transcriptome analysis revealed color formation in purple leaf mustard ( Brassica juncea)
作者：Di, Hongmei;Zhao, Yatian;Zhou, Aolian;Yu, Xuena;Huang, Huanhuan;Tang, Yi;Li, Huanxiu;Zhang, Fen;Huang, Zhi;Sun, Bo;Chen, Zhifeng;Ma, Jie;Liu, Duchen;Escalona, Victor Hugo;Qian, Guiping
关键词：Mustard; Flavonoids; Anthocyanin; Photosynthesis; Transcription factors
-
Optimizing the quality of horticultural crop: insights into pre-harvest practices in controlled environment agriculture
作者：Zhao, Xinyi;Qiu, Yujie;Cai, Chengcheng;Tian, Mengliang;Liu, Fan;Peng, Jie;Zhang, Li;Yang, Xiao;Hu, Jiangtao;Huang, Tao;Li, Zonggeng;Wang, Zheng;Liang, Ying
关键词：controlled environment agriculture; pre-harvest practices; nutrient supply; light regulation; plant-growth regulator; horticultural crop
