Genome-wide identification, putative functionality and interactions between lncRNAs and miRNAs in Brassica species
文献类型： 外文期刊
作者： Zhang, Jinfang 1 ; Wei, Lijuan 2 ; Jiang, Jun 1 ; Mason, Annaliese S. 3 ; Li, Haojie 1 ; Cui, Cheng 1 ; Chai, Liang 1 ; Z 1 ;
作者机构： 1.Sichuan Acad Agr Sci, Crop Res Inst, Chengdu 6110066, Sichuan, Peoples R China
2.Southwest Univ, Chongqing Engn Res Ctr Rapeseed, Coll Agron & Biotechnol, Chongqing 400716, Peoples R China
3.Justus Liebig Univ, IFZ Res Ctr Biosyst Land Use & Nutr, D-35392 Giessen, Germany
4.Sichuan Acad Agr Sci, Inst Agroprod Proc Sci & Technol, Chengdu 6110066, Sichuan, Peoples R China
5.Jiangxi Agr Univ, Agron Coll, Key Lab Crop Physiol Ecol & Genet Breeding, Minist Educ, Nancha
期刊名称：SCIENTIFIC REPORTS （ 影响因子：4.379； 五年影响因子：5.133 ）
ISSN： 2045-2322
年卷期： 2018 年 8 卷
页码：
收录情况： SCI
摘要： Non-coding RNA (ncRNA) is abundant in plant genomes, but is poorly described with unknown functionality in most species. Using whole genome RNA sequencing, we identified 1885, 1910 and 1299 lncRNAs and 186, 157 and 161 miRNAs at the whole genome level in the three Brassica species B. napus, B. oleracea and B. rapa, respectively. The lncRNA sequences were divergent between the three Brassica species. One quarter of lncRNAs were located in tandem repeat (TR) region. The expression of both lncRNAs and miRNAs was strongly biased towards the A rather than the C subgenome in B. napus, unlike mRNA expression. miRNAs in genic regions had higher average expression than miRNAs in non-genic regions in B. napus and B. oleracea. We provide a comprehensive reference for the distribution, functionality and interactions of lncRNAs and miRNAs in Brassica.
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