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Characterization of the mitochondrial genomes of three species in the ectomycorrhizal genus Cantharellus and phylogeny of Agaricomycetes

文献类型： 外文期刊

作者： Li, Qiang 4 ; Liao, Min 2 ; Yang, Mei 3 ; Xiong, Chuan 1 ; Jin, Xin 1 ; Chen, Zuqin 1 ; Huang, Wenli 1 ;

作者机构： 1.Sichuan Acad Agr Sci, Biotechnol & Nucl Technol Res Inst, Chengdu 610061, Sichuan, Peoples R China

2.Mianyang Teachers Coll, Coll Life Sci & Biotechnol, Mianyang 621000, Sichuan, Peoples R China

3.Panzhihua City Acad Agr & Forest Sci, Panzhihua 617061, Sichuan, Peoples R China

4.Sichuan Univ, Coll Life Sci, Minist Educ, Key Lab Bioresource & Ecoenvironm, Chengdu 610065, Sichuan, Peoples R China

关键词： Cantharellus; Mitochondrial genome; Evolution; Phylogeny; Molecular marker

期刊名称：INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES （ 影响因子：6.953； 五年影响因子：6.737 ）

ISSN： 0141-8130

年卷期： 2018 年 118 卷

页码：

收录情况： SCI

摘要： Cantharellus is a large ectomycorrhizal genus. Here, we assembled and annotated the mitochondrial genomes of C. lutescens, C. appalachiensis, and two specimens of C. cibarius. We found that all four mitochondria! genomes were circular and between 56,786 bp and 80,736 bp, long. The length and GC content of the protein-coding genes (PCGs) in the four mitogenomes varied. All tRNAs were folded into classical cloverleaf secondary structures; 16 of the 26 identified tRNAs contained variable sites across Cantharellus genus. C. appalachiensis was found containing the most repeated sequences (11.32% of the mitogenome), along with a substantial number of gene rearrangements. Comparative analysis of three C. cibarius specimens indicated that the mitogenomes of specimens from different regions differed. The Ka/Ks ratios of all 15 PCGs identified across all four mitogenomes were <1, indicating that these genes have been subject to purifying selection. Phylogenetic analysis recovered a well-supported tree based on a combined analysis of the 15 PCGs. In addition, we identified cob, cox], and rotas potential single-gene markers for the analysis of phylogenetic relationships among Agaricomycetes species. The mitogenomes reported in this study will facilitate the study of population genetics and evolution in Cantharellus and other closely related species. (C) 2018 Elsevier B.V. All rights reserved.

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