您好，欢迎访问四川省农业科学院 机构知识库！

Comparative transcriptome analysis of cold-tolerant and -sensitive asparagus bean under chilling stress and recovery

文献类型： 外文期刊

作者： Miao, Mingjun 1 ; Tan, Huaqiang 3 ; Liang, Le 1 ; Huang, Haitao 4 ; Chang, Wei 2 ; Zhang, Jianwei 1 ; Li, Ju 2 ; Tang, Yi 1 ; Li, Zhi 2 ; Lai, Yunsong 1 ; Yang, Liang 2 ; Li, Huanxiu 1 ;

作者机构： 1.Sichuan Agr Univ, Coll Hort, Chengdu, Sichuan, Peoples R China

2.Sichuan Acad Agr Sci, Hort Res Inst, Chengdu, Sichuan, Peoples R China

3.Chengdu Acad Agr & Forestry Sci, Chengdu, Sichuan, Peoples R China

4.Mianyang Acad Agr Sci, Mianyang, Sichuan, Peoples R China

关键词： Asparagus bean; Sesquipedialis; RNA-seq; Cold stress; Recovery; Transcriptome

期刊名称：PEERJ （ 影响因子：3.061； 五年影响因子：3.537 ）

ISSN： 2167-8359

年卷期： 2022 年 10 卷

页码：

收录情况： SCI

摘要： Background. Low temperature is a type of abiotic stress that threatens the growth and yield of asparagus bean. However, the key genes and regulatory pathways involved in low temperature response in this legume are still poorly understood. Methodology. The present study analyzed the transcriptome of seedlings from two asparagus bean cultivars-Dubai bean and Ningjiang 3-using Illumina RNA sequencing (RNA-seq). Correlations between samples were determined by calculating Pearson correlation coefficients (PCC) and principal component analysis (PCA). Differentially expressed genes (DEGs) between two samples were identified using the DESeq package. Transcription factors (TF) prediction, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis of DEGs were also performed. Results. Phenotypes and physiological indices indicated that Ningjiang 3 seedlings tolerated cold better than Dubai bean seedlings, in contrast to adult stage. The transcriptome dynamics of the two cultivars were closely compared using Illumina RNA-seq following 0, 3,12, and 24 h of cold stress at 5 degrees C and recovery for 3 h at 25 degrees C room temperature. Global gene expression patterns displayed relatively high correlation between the two cultivars (>0.88), decreasing to 0.79 and 0.81, respectively, at 12 and 24 h of recovery, consistent with the results of principal component analysis. The major transcription factor families identified from differentially expressed genes between the two cultivars included bHLH, NAC, C2H2, MYB, WRKY, and AP2/ERF. The representative GO enrichment terms were protein phosphorylation, photosynthesis, oxidation-reduction process, and cellular glucan metabolic process. Moreover, KEGG analysis of DEGs within each cultivar revealed 36 transcription factors enriched in Dubai bean and Ningjiang 3 seedlings under cold stress. Conclusions. These results reveal new information that will improve our understanding of the molecular mechanisms underlying the cold stress response of asparagus bean and provide genetic resources for breeding cold-tolerant asparagus bean cultivars.

  • 相关文献
作者其他论文 更多>>
置顶
购物车
反馈

© 京ICP备09089781号-29 主办单位：四川省农业科学院

学术资源： 中国农业科学院 农业专业知识服务系统 农科联盟资源共建共享平台 中国农业科技文献与信息服务平台 中国农业期刊集成服务平台