Starch content differences between two sweet potato accessions are associated with specific changes in gene expression
文献类型： 外文期刊
作者： Yang, Songtao 1 ; Liu, Xiaojing 2 ; Qiao, Shuai 1 ; Tan, Wenfang 1 ; Li, Ming 3 ; Feng, Junyan 3 ; Zhang, Cong 3 ; Kang, 1 ;
作者机构： 1.Sichuan Acad Agr Sci, Crop Res Inst, Chengdu 610066, Peoples R China
2.Nanchang Univ, Coll Life Sci, Key Lab Mol Biol & Gene Engn Jiangxi Prov, Nanchang 330031, Jiangxi, Peoples R China
3.Sichuan Acad Agr Sci, Inst Biotechnol & Nucl Technol, Chengdu 610061, Sichuan, Peoples R China
4.Jiangxi Inst Red Soil, Nanchang 331717, Jiangxi, Peoples R China
关键词： Gene regulation; RNA-Seq; Storage root; Starch content; Sweet potato
期刊名称：FUNCTIONAL & INTEGRATIVE GENOMICS （ 影响因子：3.41； 五年影响因子：3.616 ）
ISSN： 1438-793X
年卷期： 2018 年 18 卷 6 期
页码：
收录情况： SCI
摘要： Sweet potato (Ipomoea batatas (L.) Lam.) is one of the most important root crops in the world. Initial formation and development of storage roots (SRs) are key factors affecting its yields. In order to study the molecular mechanism and regulatory networks of the SRs development process, we have analyzed root transcriptomes between the high and low starch content sweet potato accessions at three different developmental stages. In this study, we assembled 46,840 unigenes using Illumina paired-end sequencing reads and identified differentially expressed genes (DEGs) between two accessions. The numbers of DEGs were increased with the development of SRs, indicating that the difference between two accessions is enlarging with the maturation. DEGs were mainly enriched in starch biosynthesis, plant hormones regulatory, and genetic information processing pathways. Then, expression patterns of DEGs that are most significant and starch biosynthesis related were validated using qRT-PCR. Our results provide valuable resources to future study on molecular mechanisms of SRs development and candidate genes for starch content improvement in sweet potato.
- 相关文献
作者其他论文 更多>>
-
Innovative no-till seeding technology improves yield and nitrogen use efficiency while reducing environmental pressure in wheat after rice harvesting
作者：Liu, Miao;Wu, Xiaoli;Li, Ming;Xiong, Tao;Li, Chaosu;Tang, Yonglu;Liu, Miao;Wu, Xiaoli;Li, Chaosu;Tang, Yonglu
关键词：Wheat yield; Seeding technology; 15 N labeling; Nitrogen use efficiency; Environmental footprint; Sustainability
-
Soil potentially toxic element pollution at different urbanization intensities: Quantitative source apportionment and source-oriented health risk assessment
作者：Li, Xinyun;Li, Lulu;Li, Ting;An, Ji;Pu, Yulin;Jia, Yongxia;Liu, Xiaojing;Li, Yun;Zhou, Zijun;Zhang, Shirong;Xu, Xiaoxun;Wang, Guiyin
关键词：Potentially toxic elements; Urbanization intensity; Source apportionment; Risk assessment
-
Cadmium-resistant phosphate-solubilizing bacteria immobilized on phosphoric acid-ball milling modified biochar enhances soil cadmium passivation and phosphorus bioavailability
作者：Zhang, Tingrui;Li, Ting;Pu, Yulin;Jia, Yongxia;Liu, Xiaojing;Li, Yun;Zhou, Zijun;Li, Zengqiang;Zhang, Shirong;Wang, Guiyin;Xu, Xiaoxun;Li, Ting
关键词：Cadmium (Cd); Modi fied biochar; Phosphorus bioavailability; Microbial bioremediation; Microbial diversity
-
Effect of potassium fertilizer on tea yield and quality: A meta-analysis
作者：Xi, Shiqi;Chu, Hongyu;Li, Ting;Pu, Yulin;Jia, Yongxia;Liu, Xiaojing;Zhou, Zijun;Zhang, Shirong;Xu, Xiaoxun;Wang, Guiyin;Zhou, Zijun;Li, Ting
关键词：Potassium fertilizer; tea yield; tea quality; soil-available potassium; tea types
-
Mitigation strategies for excessive cadmium in rice
作者：Song, Jun;Song, Jun;Liu, Yonghong;Song, Qiuchi;Wang, Dong;Liu, Yonghong
关键词：cadmium-contaminated rice; cadmium toxicity; chemical speciation; Cd removal; genetic engineering
-
Molecular characterization of stable QTL and putative candidate genes for grain zinc and iron concentrations in two related wheat populations
作者：Sun, Mengjing;Tong, Jingyang;Wang, Yue;Song, Jie;Rasheed, Awais;Li, Ming;Cao, Shuanghe;Xia, Xianchun;He, Zhonghu;Hao, Yuanfeng;Luo, Qiaoling;Zheng, Qi;Zhang, Yelun;Pu, Zongjun;Zheng, Jianmin;Liu, Lianzheng;Zhou, Anding;Rasheed, Awais;He, Zhonghu;Rasheed, Awais
关键词：
-
A preliminary study on the root-knot nematode resistance of the cherry plum cultivar Mirabolano 29C
作者：Liu, Jia;Li, Hongwen;Chen, Lijuan;Wang, Dong;Zhang, Guowei;Yao, Meiying;Zhu, Jin;Luo, Deyong;Xie, Xiaodou;Xie, Jialian;Li, Huajia;Li, Ke;Liu, Shuo;Zhang, Yuping
关键词：disease resistance; grafting; phenylpropane pathway; rootstocks; transcriptome sequencing
